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GATK Staff
Latest Release: 11/14/18
Release Notes can be found here.

"Aborted" status in a running job

Hi. When I'm running a batch of samples on FireCloud, some of the jobs finished quickly, however some jobs keep "running" for days. And I check the Monitor, it shows that this job is in an "Aborted" status. The stdout and stderr shows "Error! This file was not found." Would you please do me a favor to check what's wrong with my running jobs? Thank you.

For example, "operations/EP2x2u3xKhid0_Xssoyr1fMBIMWx_piqFSoPcHJvZHVjdGlvblF1ZXVl" (Call ID)

Some error message looks like to following is showed:

{
"error": {
"errors": [{
"domain": "global",
"reason": "notFound",
"message": "Not Found"
}],
"code": 404,
"message": "Not Found"
},
"timestamp": 1474856974039
}

Answers

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