Latest Release: 04/24/19
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Available pipleines and tools on firecloud

Hi,

Is there a list of tools and pipelines available on firecloud somewhere?

I am specifically interested to know if GATK toolkit and all of the Broad's Cancer Genome Analysis group (CGA) modules like ABSOLUTE, GISTIC, MuTect, MutSig, etc

Thanks in advance.

Rajesh

Answers

  • jneffjneff BostonMember, Broadie, Moderator admin

    Hi Rajesh,

    FireCloud currently includes three tutorial workspaces with abbreviated versions of tools and pipelines: the Broad Mutation Calling Workflow, Cluster Analysis, and GISTIC2.0. More information can be found in the Tutorials topic in the User Guide.

    Development is also underway for several Cancer Genome Analysis tools and pipelines. I can provide an update when additional tools are available.

    Thanks,
    Jason
    FireCloud Support Team

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