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Metric collection task stalls
I have a metric collection task that's part of a workflow that I've run on 372 samples. For 2 of those samples, this particular task seems to stall. The task is supposed to read in a BAM file and output a few metrics files and a PDF. From the stderr logs I can see that it successfully reads the entire BAM file but never writes any output files and becomes stuck. I've tried rerunning the workflow with call caching on but get the same result. I've also downloaded the input BAM file for one sample and tried running it locally with the same docker image and in finishes without any issues. I can't figure out what is going wrong or how else to debug this issue. Any insight you have would be very helpful. Thanks!