PAPI error code 10 - and 10% of jobs failed

bhaasbhaas Broad InstituteMember, Broadie

Hi,

About 10% of my 1k jobs failed, and looking at the first couple, they indicate:

message: Task ctat_fusion_wf.CTAT_FUSION_TASK_CRAM:NA:1 failed. The job was stopped before the command finished. PAPI error code 10. 14: VM ggp-8404218224827858399 stopped unexpectedly.

In the google bucket, the job script was written, but nothing else happened.

Any ideas?

Best Answers

  • bhaasbhaas Broad Institute
    Accepted Answer

    I see. OK, will invoke the maxRetries to try to mitigate this in future runs.

Answers

  • SChaluvadiSChaluvadi admin Member, Broadie, Moderator admin

    Hey @bhaas, currently looking it and will get back to you with possible reasons for truncated jobs!

  • bhaasbhaas Broad InstituteMember, Broadie

    I'm still getting jobs coming back with this PAPI error. It wouldn't be such a big deal if I could just click a button to retry all failed jobs, but instead, I need to scrape the web page for lists of failed samples, create a new sample set, and then relaunch... not fun. ;-)

  • bhaasbhaas Broad InstituteMember, Broadie
    Accepted Answer

    I see. OK, will invoke the maxRetries to try to mitigate this in future runs.

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