Heads up:
We’re moving the GATK website, docs and forum to a new platform. Read the full story and breakdown of key changes on this blog.

WDL validates and runs fine standalone, but crashes when uploaded to Firecloud

gordon123gordon123 BroadMember, Broadie

I inherited a large block of WDL 1.0 It validates fine on womtool 32, 33.1, and 34, and I've tested that it runs fine on Cromwell 34. However, when I try to upload it to the method repo, via ether GUI or FISSFC, I get a WDL validation error:

Error 400 (FireCloud): Invalid WDL: Unrecognized token on line 653, column 23:

        -t ~{cpu} \

Any idea what is happening or the best way to debug?

Best Answers


Sign In or Register to comment.