Heads up:
We’re moving the GATK website, docs and forum to a new platform. Read the full story and breakdown of key changes on this blog.

Submission outputs API endpoint fails for 'orchestration' WDLs

If you have a WDL that imports other WDLs to run, but the top level WDL has no tasks/calls of its own, then the API endpoint for getting submission outputs fails.

Example: https://api.firecloud.org/api/workspaces/unity-benchmarking-development/sandbox-test/submissions/1a8dff7e-a9dc-4bbf-b412-bd16fc5d3d13/workflows/4df9be44-6944-427a-b938-742a4b65d6a7/outputs


502: "message": "Object is missing required member 'calls'"

You can still make an API call to get the call-level metadata (above URL, minus '/outputs' on the end) and that works. But just getting the outputs via the API fails for this kind of submission.


Best Answer


Sign In or Register to comment.