Latest Release: 05/01/19
Release Notes can be found here.

how to handle multiple ubam files for a sample, each represent a read group.

Please see if following data model files are properly formated

participate file:

entity:participant_id disease gender age
MORL-X6031_50 Otoscope M 53

sample file:

entity:sample_id participant_id sample_type ubam
X6031_50_2_1 MORL-X6031_50 Hearing_Loss gs://fc-ec4fde6c-2875-418b-8eb5-942bc7a8f438/Finished/X6031_50_2_1.unmapped.bam
X6031_50_2_2 MORL-X6031_50 Hearing_Loss gs://fc-ec4fde6c-2875-418b-8eb5-942bc7a8f438/Finished/X6031_50_2_2.unmapped.bam
X6031_50_2_3 MORL-X6031_50 Hearing_Loss gs://fc-ec4fde6c-2875-418b-8eb5-942bc7a8f438/Finished/X6031_50_2_3.unmapped.bam
X6031_50_2_4 MORL-X6031_50 Hearing_Loss gs://fc-ec4fde6c-2875-418b-8eb5-942bc7a8f438/Finished/X6031_50_2_4.unmapped.bam
X6031_50_2_5 MORL-X6031_50 Hearing_Loss gs://fc-ec4fde6c-2875-418b-8eb5-942bc7a8f438/Finished/X6031_50_2_5.unmapped.bam
X6031_50_2_6 MORL-X6031_50 Hearing_Loss gs://fc-ec4fde6c-2875-418b-8eb5-942bc7a8f438/Finished/X6031_50_2_6.unmapped.bam
X6031_50_2_7 MORL-X6031_50 Hearing_Loss gs://fc-ec4fde6c-2875-418b-8eb5-942bc7a8f438/Finished/X6031_50_2_7.unmapped.bam
X6031_50_2_8 MORL-X6031_50 Hearing_Loss gs://fc-ec4fde6c-2875-418b-8eb5-942bc7a8f438/Finished/X6031_50_2_8.unmapped.bam

sample set file:

membership:sample_set_id sample_id
MORL-X6031 X6031_50_2_1
MORL-X6031 X6031_50_2_2
MORL-X6031 X6031_50_2_3
MORL-X6031 X6031_50_2_4
MORL-X6031 X6031_50_2_5
MORL-X6031 X6031_50_2_6
MORL-X6031 X6031_50_2_7
MORL-X6031 X6031_50_2_8

thanks

Tagged:

Answers

Sign In or Register to comment.