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GATK on Google Genomics scale up quota recommendations

We managed to analyze our own full genome data following the recommondations on GATK on Google Genomics. When we launch the analysis for a single sample, output is produced within 24 hours, with the recommended "best getting started experience" resource quota:

  • Cores: 101 (minimum 17)
  • Reserved Persistent Disk Space (GB): 10,500 (minimum 320)
  • External In-Use IPs: 51 (minimum 2)

How would you recommend to extend these quota if we want to analyze multiple samples -say 100-
simultaneously, and still get results within 24 hours. It would be very helpful if you could provide us with a second point on the scale up curve based on your experience.

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  • Tiffany_at_BroadTiffany_at_Broad Cambridge, MAMember, Broadie, Moderator admin

    Hi @lucdh - Sorry for the delay. Are you using FireCloud to run this?

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