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"recapseg_bed" should be "recapseg_tsv" in "gatk_cov_pull" ?
For "gatk_cov_pull" in Firecloud, the input file "recapseg_bed" should be a GATK-style tsv file based on manual of "CalculateTargetCoverage". So, "recapseg_bed" is a little bit misleading. Is that correct? I have modified it and published a new one.