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Can the order of the inputs and outputs to a method config be displayed in a rational order?
This is a similar request to a previous one of mine, but it's different.
In a method config the order of the inputs (and outputs) is seemingly arbitrary:
QCAndPrePhase.dataset_fam: (File)this.fam QCAndPrePhase.reference_fasta: (File)workspace.reference_fasta QCAndPrePhase.dbSnp_vcf_index: (File)workspace.dbSnp_vcf_index QCAndPrePhase.reference_dict: (File)workspace.reference_dict QCAndPrePhase.reference_index: (File)workspace.reference_index QCAndPrePhase.dataset_bed: (File)this.bed QCAndPrePhase.dbSnp_vcf: (File)workspace.dbSnp_vcf QCAndPrePhase.genetic_maps_eagle: (File)workspace.genetic_map_eagle QCAndPrePhase.dataset_bim: (File)this.bim QCAndPrePhase.plink_frq: (File)workspace.panel_plink_frq
In this case, I think that the order in the WDL is the reasonable way to implement because the author of the WDL can control how it will be presented. for example, put the
dbSnp_vcf right before
dbSnp_vcf_index or putting
reference_fasta first, then
reference_dict and then