Does anyone have a sense of Mutect Filtering PoN, like "final_summed_tokens.hist.bin". I want to try to build one. But, I don't know how. Thank you very much! I will really appreciate your help.
I think this is related to FireCloud, so I am moving your question to that section of the forum.
You may also be interested in the Mutect2 tutorial the GATK team presents at workshops. You can find it in the presentations section.
hi @cbao, please contact Chet Birger @birger about this . I have recently updated the WDL that generates the PON files.