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[Failed] ERROR message of "FilterWorkflow.maf_merge_task" in MutationCalling_Filtering workflow

cbaocbao Member, Broadie ✭✭
edited September 2017 in Ask the FireCloud Team

Hi,

The message is shown as following. Please help me ...

message: Task FilterWorkflow.maf_merge_task:NA:1 failed. JES error code 5. Message: 10: Failed to delocalize files: failed to copy the following files: "/mnt/local-disk/EAC-11_15-TS-NT-SM-ADQPJ-SM-ADQPH.union.maf -> gs://fc-f300546b-ca71-489e-ba0c-38f33fc5e19f/d525503e-68f4-43ad-a93f-83dd300f0eab/FilterWorkflow/b7ff2f91-c3e2-4444-b180-229794e34c01/call-maf_merge_task/EAC-11_15-TS-NT-SM-ADQPJ-SM-ADQPH.union.maf (cp failed: gsutil -q -m cp -L /var/log/google-genomics/out.log /mnt/local-disk/EAC-11_15-TS-NT-SM-ADQPJ-SM-ADQPH.union.maf gs://fc-f300546b-ca71-489e-ba0c-38f33fc5e19f/d525503e-68f4-43ad-a93f-83dd300f0eab/FilterWorkflow/b7ff2f91-c3e2-4444-b180-229794e34c01/call-maf_merge_task/EAC-11_15-TS-NT-SM-ADQPJ-SM-ADQPH.union.maf, command failed: CommandException: No URLs matched: /mnt/local-disk/EAC-11_15-TS-NT-SM-ADQPJ-SM-ADQPH.union.maf\nCommandException: 1 file/object could not be transferred.\n); /mnt/local-disk/EAC-11_15-TS-NT-SM-ADQPJ-SM-ADQPH.intersection.maf -> gs://fc-f300546b-ca71-489e-ba0c-38f33fc5e19f/d525503e-68f4-43ad-a93f-83dd300f0eab/FilterWorkflow/b7ff2f91-c3e2-4444-b180-229794e34c01/call-maf_merge_task/EAC-11_15-TS-NT-SM-ADQPJ-SM-ADQPH.intersection.maf (cp failed: gsutil -q -m cp -L /var/log/google-genomics/out.log /mnt/local-disk/EAC-11_15-TS-NT-SM-ADQPJ-SM-ADQPH.intersection.maf gs://fc-f300546b-ca71-489e-ba0c-38f33fc5e19f/d525503e-68f4-43ad-a93f-83dd300f0eab/FilterWorkflow/b7ff2f91-c3e2-4444-b180-229794e34c01/call-maf_merge_task/EAC-11_15-TS-NT-SM-ADQPJ-SM-ADQPH.intersection.maf, command failed: CommandException: No URLs matched: /mnt/local-disk/EAC-11_15-TS-NT-SM-ADQPJ-SM-ADQPH.intersection.maf\nCommandException: 1 file/object could not be transferred.\n)"
Post edited by KateN on

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