The current GATK version is 3.6-0
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Compile a single walker jar?

Is there anyway to generate a jar file to execute a single walker that I wrote?

Answers

  • Geraldine_VdAuweraGeraldine_VdAuwera Administrator, Dev Posts: 10,712 admin

    We have some instructions in this document: http://www.broadinstitute.org/gatk/guide/article?id=1301
    but it may be a little out of date. I'll ask @droazen (our build engineer extraordinaire) if he can pitch in with more specific advice.

    FYI we are switching the GATK's build system over to Maven, which will make it a lot easier to do what you want. This will be available starting with the next release, which should be just a couple of weeks away now.

    Geraldine Van der Auwera, PhD

  • andremrsantosandremrsantos Member Posts: 10

    I've try reading this article, but I got a little confuse. Specially in my case that use GATK as external library for my development. But any help is valid.
    Thank you

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