The current GATK version is 3.6-0
Examples: Monday, today, last week, Mar 26, 3/26/04

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Intervals specified using vcf files are off by 1

raylimraylim Posts: 1Member

I tried specifying intervals using a vcf file to HaplotypeCaller and I'm not getting the appropriate hits, because it appears that GATK is interpreting the vcf file as 0-based.

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