The current GATK version is 3.7-0
Examples: Monday, today, last week, Mar 26, 3/26/04

Howdy, Stranger!

It looks like you're new here. If you want to get involved, click one of these buttons!

Powered by Vanilla. Made with Bootstrap.
GATK 3.7 is here! Be sure to read the Version Highlights and optionally the full Release Notes.
Register now for the upcoming GATK Best Practices workshop, Feb 20-22 in Leuven, Belgium. Open to all comers! More info and signup at http://bit.ly/2i4mGxz

About the GATK resource bundle

HyunminHyunmin Seoul, KoreaMember Posts: 14
edited January 2014 in Ask the GATK team

Dear GATK team,

When I annotate the dbsnp id to my vcf, I used the dbsnp 137 vcf file in resource bundle.
but, it has some entry in original dbsnp137.
This mean it has different entry in dbsnp137 (from UCSC). One example is dbsnp id in MT chromosome.
so, I can't get fully annotated dbsnp, when I using the dbsnp 137 in gatk resource bundle.

Tagged:

Best Answer

Answers

  • Geraldine_VdAuweraGeraldine_VdAuwera Administrator, Dev Posts: 10,970 admin

    I'm sorry, I don't understand your question. Can you maybe provide an example of what the problem is?

    Geraldine Van der Auwera, PhD

  • HyunminHyunmin Seoul, KoreaMember Posts: 14
    edited January 2014

    @Geraldine_VdAuwera said:
    I'm sorry, I don't understand your question. Can you maybe provide an example of what the problem is?

    Sorry for my eng. I don't have an example now. (about a month ago..).
    I changed my question.
    Is it different GATK Bundle dbsnp137 (dbsnp_137.hg19.vcf) with UCSC dbsnp137 (snp137.txt.gz)?

Sign In or Register to comment.