The current GATK version is 3.7-0
Examples: Monday, today, last week, Mar 26, 3/26/04

Howdy, Stranger!

It looks like you're new here. If you want to get involved, click one of these buttons!

Get notifications!


You can opt in to receive email notifications, for example when your questions get answered or when there are new announcements, by following the instructions given here.

Did you remember to?


1. Search using the upper-right search box, e.g. using the error message.
2. Try the latest version of tools.
3. Include tool and Java versions.
4. Tell us whether you are following GATK Best Practices.
5. Include relevant details, e.g. platform, DNA- or RNA-Seq, WES (+capture kit) or WGS (PCR-free or PCR+), paired- or single-end, read length, expected average coverage, somatic data, etc.
6. For tool errors, include the error stacktrace as well as the exact command.
7. For format issues, include the result of running ValidateSamFile for BAMs or ValidateVariants for VCFs.
8. For weird results, include an illustrative example, e.g. attach IGV screenshots according to Article#5484.
9. For a seeming variant that is uncalled, include results of following Article#1235.

Did we ask for a bug report?


Then follow instructions in Article#1894.

Formatting tip!


Wrap blocks of code, error messages and BAM/VCF snippets--especially content with hashes (#)--with lines with three backticks ( ``` ) each to make a code block as demonstrated here.

Jump to another community
Picard 2.9.4 is now available. Download and read release notes here.
GATK 3.7 is here! Be sure to read the Version Highlights and optionally the full Release Notes.

beside the bug fix, any change in reducedReads compression between 2.7.4 and 2.8.1?

Dear all,

I have discussed with the GATK team a small issue related to the reduceReads compression, which has been fixed just around the end of November. This was 8-9 days ago and I have been actively reprocessing a large number of BAM files to create new reducedReads BAMs. It all works fine now but it's not convenient to cite a nightly release version in publications. Therefore I would like to move to 2.8.1. Now it would make my life so much easier if I could do this without re-reducing again the just fixed BAM files.

Based on the release notes, and given the very short time frame, am I right to assume that 2.8.1 is equivalent to 2.7.4 (the nightly version following the bug fix , dated November 29) as far as reducedReads compression is concerned? Has anything important happened over the last 10 days that would not have been specified in the release notes?

Tagged:

Answers

Sign In or Register to comment.