The current GATK version is 3.6-0
Examples: Monday, today, last week, Mar 26, 3/26/04

Howdy, Stranger!

It looks like you're new here. If you want to get involved, click one of these buttons!

Powered by Vanilla. Made with Bootstrap.

Haplotypecaller, change setting after the run!

myoglumyoglu Member Posts: 39

--stand_emit_conf and --stand_call_conf is by default set to 30

Everything lower will be "LOWQUAL", but is it possible to set --stand_emit_conf and --stand_call_conf set to 2, without running everything one more time?

Thanks!

Best Answers

Answers

  • myoglumyoglu Member Posts: 39

    Hm, guess Ill be running it all again with really low settings. And then just alter filtering afterwards.

Sign In or Register to comment.