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I developed some tools deeply based on UnifiesGenotyper Engine long time ago (GATK V1.5). Now I want to update some of my tools to GATK V2. But in Github source code, I can't find these walkers source code anymore...
Are these code still public available, and when did they disappear?
If they are still "alive" (open source..), could anyone tell me where they are?
In the previous very old version, it was under "org.broadinstitute.sting.gatk.walkers.genotyper.UnifiedGenotyper"
Thanks very much!!