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Hi. I have run UnifiedGenotyper and the output VCF file has :
When the genotype is called you get: GT:AD:DP:GQ:PL 1/1:0,1:1:3:37,3,0 (i.e. five colon-separated fields as expected)
When the genotype is not called you get: GT:AD:DP:GQ:PL ./.:.:1 (i.e. only three colon-separated fields)
Version: (version 2.7-1-g42d771f)
Is this a bug or is this expected?