The current GATK version is 3.7-0
Examples: Monday, today, last week, Mar 26, 3/26/04

Howdy, Stranger!

It looks like you're new here. If you want to get involved, click one of these buttons!

Powered by Vanilla. Made with Bootstrap.
GATK 3.7 is here! Be sure to read the Version Highlights and optionally the full Release Notes.
Register now for the upcoming GATK Best Practices workshop, Feb 20-22 in Leuven, Belgium. Open to all comers! More info and signup at http://bit.ly/2i4mGxz

error in tutorial

Nick_BeesonNick_Beeson Member Posts: 20

http://www.broadinstitute.org/gatk/guide/topic?name=tutorials
in Step 3, the example of code still has the deprecated walker
-T AnalyzeCovariants
which when used generates this,
"ERROR MESSAGE: Walker AnalyzeCovariates is no longer available in the GATK; it has been deprecated since version 2.0 (use BaseRecalibrator instead; see documentation for usage)"

Answers

Sign In or Register to comment.