dbSNP137 and Bundle

MartaMarta Member Posts: 12

I downloaded the bundle b37 and I used the dbSNP137.b37 database in the variant call with UnifiedGenotyper. I obtained different variants with the own "rs" but I cannot find the frequency (MAF) usually reported in the database. I know that by UCSC it is possible to download a db with common SNP (MAF > 5%) or all SNP (MAF >1%). do you know which is the db in the bundle or where I can find this information?




  • Geraldine_VdAuweraGeraldine_VdAuwera Administrator, Dev Posts: 10,287 admin

    We don't have that available, so you'll need to get that from another source. Maybe UCSC provides it.

    Geraldine Van der Auwera, PhD

Sign In or Register to comment.