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Picard 2.9.0 is now available. Download and read release notes here.
GATK 3.7 is here! Be sure to read the Version Highlights and optionally the full Release Notes.

Haplotype Caller -dcov flag

Is there any way to override/re-implement the -dcov flag (which has been removed from the haplotype caller). I have a region that is almost 700 base pairs deep and continually causes a memory overload error. How can I restrict the coverage depth effectively?

Thanks,
-Paul

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