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2. Try the latest version of tools.
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Picard 2.9.4 is now available. Download and read release notes here.
GATK 3.7 is here! Be sure to read the Version Highlights and optionally the full Release Notes.

ReduceReads stack trace issue.

Hello all thank for the great work.

I have run into an issue with ReduceReads and I was hoping you could offer some insite. I'm getting the following stack trace issue (attached file). I looked around the forums, and others who were getting stack trace issue using ReduceReads were told code fixes would remedy the issue so I thought I would check with you. I also ran samtools flagstat.

txt
txt
nohup_bamstat.txt
5K

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