The current GATK version is 3.6-0
Examples: Monday, today, last week, Mar 26, 3/26/04

Howdy, Stranger!

It looks like you're new here. If you want to get involved, click one of these buttons!

Powered by Vanilla. Made with Bootstrap.
Last chance to register for the GATK workshop next week in Basel, Switzerland! http://www.sib.swiss/training/upcoming-training-events/training/gatk-workshop-lecture

Can SelectVariants be used to limit VCF files by interval list

sboylesboyle Bay Area, CAPosts: 28Member

Hello I would like to subset a VCF file to only save a few specific regions of the whole genome. I know some of your tools allow for an interval list to be used to subset the region analyzed. Do you have a tool or are you aware of a tool that would allow me to quickly do this from an interval list or something similar? I could make a little script myself, but I figure sub setting and printing out a specific genomic region of interest in a VCF file has to be a solved problem by GATK.

Thanks for your help!
~Sean

Best Answer

Answers

Sign In or Register to comment.