The current GATK version is 3.7-0
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# Bug in HaplotypeCaller 2.4-7 : "Bad likelihoods detected"

edited March 2013

If you encounter this bug too, please don't post a new question about it. Feel free to comment in this thread to let us know you have also had the same problem.

Thank you for your patience while we work to fix this issue.

Post edited by Geraldine_VdAuwera on
Tagged:

• Member
edited March 2013

Geraldine,

I've encountered this issue, but I've seen this announcement just a moment too late and made my post at http://gatkforums.broadinstitute.org/discussion/comment/4114#Comment_4114

My apologies!

Giorgio

FYI we are working on a solution to the problem; we'll post updates in this thread.

Update: we have a theoretical fix for the "Bad likelihoods detected error" and are now working on implementing it.

• Member

I also have this error for this version