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Member

Hi to all
I have a problem in understanding an error output produced by PrintReads tool. This is my command line(the recal.grp file is correctly produced by BaseRecalibrator tool):

java -jar /Archive/Software/GATK2.1-8/GenomeAnalysisTK.jar -T PrintReads -I /Path-to-BAMfile -BQSR /Path-to-recal.grp -o /Path-to-output

The error output is:

##### ERROR ------------------------------------------------------------------------------------------

As apparently no further information are available I cannot understand what is the issue.
Thank for the help!
Giuliano

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