The current GATK version is 3.7-0
Examples: Monday, today, last week, Mar 26, 3/26/04

#### Howdy, Stranger!

It looks like you're new here. If you want to get involved, click one of these buttons!

You can opt in to receive email notifications, for example when your questions get answered or when there are new announcements, by following the instructions given here.

#### ☞ Did you remember to?

1. Search using the upper-right search box, e.g. using the error message.
3. Include tool and Java versions.
4. Tell us whether you are following GATK Best Practices.
5. Include relevant details, e.g. platform, DNA- or RNA-Seq, WES (+capture kit) or WGS (PCR-free or PCR+), paired- or single-end, read length, expected average coverage, somatic data, etc.
6. For tool errors, include the error stacktrace as well as the exact command.
7. For format issues, include the result of running ValidateSamFile for BAMs or ValidateVariants for VCFs.
8. For weird results, include an illustrative example, e.g. attach IGV screenshots according to Article#5484.
9. For a seeming variant that is uncalled, include results of following Article#1235.

#### ☞ Formatting tip!

Wrap blocks of code, error messages and BAM/VCF snippets--especially content with hashes (#)--with lines with three backticks ( ` ) each to make a code block as demonstrated here.

GATK 3.7 is here! Be sure to read the Version Highlights and optionally the full Release Notes.

Member
edited February 2013

Hello,
I am having a hard time finding the resource vcf files, needed for VariantRecalibration.

hapmap_3.3.b37.sites.vcf
1000G_omni2.5.b37.sites.vcf
dbsnp_135.b37.vcf

I don't seem to find them in the GATK bundle, as suggested:

Any help appreciated
Thanks,
G.

Post edited by Geraldine_VdAuwera on
Tagged:

Are you having trouble finding the bundle itself, or just navigating the contents?

• Member

I see no vcf file in this folder.
Am I missing something?
Thanks,
G.

• Member

I have one last question.
has the files contained in the b37 folder right?
What is the difference between these and the hg19 folder?.
Thanks again,
G.