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HaplotypeCaller on haploid genomes

RoddyPRoddyP Member Posts: 2
edited February 2013 in Ask the GATK team

I'm trying to run HaplotypeCaller on a haploid organism. Is this possible? What argument should I use for this?
My first attempt produced a diploid calls.

Sorry for the silly question

Post edited by Geraldine_VdAuwera on

Answers

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