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# adding read group to the bam file using PICARD generated from GS reference mapper BAM file

Posts: 3
edited January 2013

how to add read group to the bam file using PICARD generated from GS reference mapper BAM file?

Post edited by Geraldine_VdAuwera on
Tagged:

That's a questIon for Picard, not for GATK...

Geraldine Van der Auwera, PhD

• Posts: 3

well thanks for the reply, I wonder why my question was not edited even though I edited it quickly once I put up the question.anyway, my task was to call SNPs using GATK pipeline from the .bam file of GS reference mapper but it did not work out because .bam file was devoid of any READ GROUP now my problem is to add read group so that I can process it using GATK. Waiting for your reply..