The current GATK version is 3.7-0
Examples: Monday, today, last week, Mar 26, 3/26/04

Howdy, Stranger!

It looks like you're new here. If you want to get involved, click one of these buttons!

Powered by Vanilla. Made with Bootstrap.
GATK 3.7 is here! Be sure to read the Version Highlights and optionally the full Release Notes.
Register now for the upcoming GATK Best Practices workshop, Feb 20-22 in Leuven, Belgium. Open to all comers! More info and signup at http://bit.ly/2i4mGxz

GATK temporary directory

trickytanktrickytank The Walter and Eliza Hall Institute of Medical Research. Melbourne, AustraliaMember Posts: 3
edited October 2012 in Ask the GATK team

Hello,

During running of the depthOfCoverage tool, I get the error:
/tmp/RsQHCt1W: No space left on device

I have tried changing the TMPDIR environment variable (and exporting) but eventually I get the same error. Is there a way to change the temporary directory that GATK uses?

I'm running GATK v2.1-8-g5efb575 on a Linux system.

Thanks,
Rick

Post edited by Geraldine_VdAuwera on

Best Answer

Answers

Sign In or Register to comment.