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# How can I access the GSA public FTP server?

Posts: 10,382Administrator, Dev admin
edited June 29 in FAQs

NOTE: This article will be deprecated in the near future as this information will be consolidated elsewhere.

We make various files available for public download from the GSA FTP server, such as the GATK resource bundle and presentation slides. We also maintain a public upload feature for processing bug reports from users.

There are two logins to choose from depending on whether you want to upload or download something:

### Downloading

location: ftp.broadinstitute.org
username: gsapubftp-anonymous
password: <blank>


### Uploading

location: ftp.broadinstitute.org
username: gsapubftp
password: 5WvQWSfi


### Using a browser as FTP client

If you use your browser as FTP client, make sure to include the login information in the address, otherwise you will access the general Broad Institute FTP instead of our team FTP. This should work as a direct link (for downloading only):

ftp://gsapubftp-anonymous@ftp.broadinstitute.org/bundle

Post edited by Geraldine_VdAuwera on

Geraldine Van der Auwera, PhD

Tagged:

## Comments

• Posts: 10,382Administrator, Dev admin

Questions and comments up to August 2014 have been moved to an archival thread here:

http://gatkforums.broadinstitute.org/discussion/4559/questions-about-accessing-the-bundle-ftp-server

Geraldine Van der Auwera, PhD

• Cambridge, UKPosts: 1Member

Hi there. Are you planning to upgrade the Broad Bundle to work with the GRCh38 genome and if so, do you know when the datasets will be available.
Best wishes,
Chris Penkett

• Broad InstitutePosts: 3,739Member, Broadie, Moderator, Dev admin

@cpenkett‌

Hi Chris,

Have a look at this thread which may answer your questions: http://gatkforums.broadinstitute.org/discussion/3843/plans-to-update-the-gatk-bundle#latest

-Sheila

• Posts: 1Member

Hi,

I wasn't able to login ftp://gsapubftp-anonymous@ftp.broadinstitute.org/bundle. It always gave me login incorrect error message. Please help. Thanks.

Yuanqing

• Posts: 10,382Administrator, Dev admin

@yqye‌ This looks like a temporary issue with the FTP server. I'll check with the server admin. Meanwhile, try connecting again later. Sorry for the inconvenience.

Geraldine Van der Auwera, PhD

• Posts: 6Member

anonymous

works, is there a way to navigate to the bundle from there?

• Posts: 10,382Administrator, Dev admin

@naymikm I don't understand your question. Do you have a problem accessing the bundle contents?

Geraldine Van der Auwera, PhD

• Posts: 6Member

Sorry the formatting turned out weird.. I can't access the ftp server with the login credentials. user:anonymous pass: blank> works. Can I access the bundle through the ftp from there?

• Posts: 10,382Administrator, Dev admin

No, that will take you to the general Broad FTP server, not our group's. The link above worked for me when I tested it just now, does that not work for you?

Geraldine Van der Auwera, PhD

• Posts: 6Member

Hey it works now! It wasn't before... Thanks!

• GermanyPosts: 47Member

Hello, I am trying to follow this link ftp://gsapubftp-anonymous@ftp.broadinstitute.org/bundle but cannot access the bundle. Getting the following error message: "This webpage is not available".

thanks!

• Posts: 10,382Administrator, Dev admin

If the direct link is not working for you, please try using an FTP client (such as FileZilla).

Geraldine Van der Auwera, PhD

• Ann ArborPosts: 1Member

Your link
ftp://gsapubftp-anonymous@ftp.broadinstitute.org/bundle
is not working. It does not accept my password and as a guest it's not working either. I there a problem at your end?

• Broad InstitutePosts: 3,739Member, Broadie, Moderator, Dev admin

@vincenz
Hi,

It is working for me. Can you try one more time? Also, have you tried simply going to ftp.broadinstitute.org and using the username and password? https://www.broadinstitute.org/gatk/guide/article?id=1215

I hope it works this time.

-Sheila

• Wash DCPosts: 1Member

This was using FileZila, any suggestions
I used
adress: ftp.broadinstitute.org
username: gsapubftp-anonymous
passwd:

Got back
Status: Waiting to retry...
Status: Resolving address of ftp.broadinstitute.org
Status: Connecting to 69.173.80.251:21...
Status: Connection attempt failed with "ECONNREFUSED - Connection refused by server".
Error: Could not connect to server

• Broad InstitutePosts: 3,739Member, Broadie, Moderator, Dev admin

@bijuissac
Hi,

You can try checking to see to see if your firewall is blocking FileZilla. Or, you can also talk to your IT department for help.

-Sheila

• Kiel, GermanyPosts: 2Member
edited July 2015

Hi,

I can confirm that the FTP Login does not work. Connection refused when using the credentials provided above. Sheila, since you are at the Broad, I am guessing that this explains why it works for you. From Germany it really does not (the anonymous login to the public FTP works though, although of course I wasn't able to locate the bundle files there). Tried it via a browser, FileZilla and Linux CLI.

Post edited by marchoeppner on

#### Issue · Github July 2015 by Sheila

Issue Number
84
State
closed
Last Updated
Assignee
Array
Milestone
Array
Closed By
vdauwera
• Posts: 10,382Administrator, Dev admin

Ack, FTP acting up again? We're getting closer to replacing it with a better solution, but in the meantime I'll have to run this through our IT helpdesk. Sorry for the inconvenience, folks. We'll notify you when this is resolved.

Geraldine Van der Auwera, PhD

• beijingPosts: 2Member

I am use filezilla.
adress: ftp.broadinstitute.org
username: gsapubftp-anonymous
passwd:

Status: USER gsapubftp-anonymous
Status: 331 Password required for gsapubftp-anonymous
Status: PASS
Status: 530 Login incorrect.

If this username has a password?

• The University of TokyoPosts: 9Member

Hi.
I tried FTP connection to upload my data but failed.

\$ ftp
ftp> open ftp.broadinstitute.org
Connected to ftp.broadinstitute.org (69.173.80.251).
220 ProFTPD 1.3.4a Server (Broad Institute of MIT and Harvard) [69.173.80.251]
Name (ftp.broadinstitute.org:koyama): gsapubftp
331 Password required for gsapubftp
Password:
530 Login incorrect.
Login failed.
Remote system type is UNIX.
Using binary mode to transfer files.


I also tried if I can login as anonymous user but still failed.

ftp> open ftp.broadinstitute.org
Connected to ftp.broadinstitute.org (69.173.80.251).
220 ProFTPD 1.3.4a Server (Broad Institute of MIT and Harvard) [69.173.80.251]
Name (ftp.broadinstitute.org:koyama): gsapubftp-anonymous
331 Password required for gsapubftp-anonymous
Password:
530 Login incorrect.
Login failed.
Remote system type is UNIX.
Using binary mode to transfer files.


However, when I try with name 'anonymous', I can login.

ftp> open ftp.broadinstitute.org
Connected to ftp.broadinstitute.org (69.173.80.251).
220 ProFTPD 1.3.4a Server (Broad Institute of MIT and Harvard) [69.173.80.251]
Name (ftp.broadinstitute.org:koyama): anonymous
331 Anonymous login ok, send your complete email address as your password
Password:
230-Welcome to the FTP server for the Broad Institute of MIT and Harvard
in Cambridge, Massachusetts, USA.

All file transfers are logged.

If you have problems, please contact the IT/Systems Group:
help@broadinstitute.org

This information was last updated December 2011.
230 Anonymous access granted, restrictions apply
Remote system type is UNIX.
Using binary mode to transfer files.


Is this usual and how can I login as 'gsapubftp'?
Thank you for your kind helps.

tkoyama

• Broad InstitutePosts: 3,739Member, Broadie, Moderator, Dev admin

Hi,

Yes, it looks like the FTP is still not working. I will let you know when it works again.

-Sheila

• The University of TokyoPosts: 9Member

Hi, Shiela

OK. Thanks!

tkoyama

• beijingPosts: 2Member

OK！Thanks！

• AmsterdamPosts: 1Member

Is the FTP already working? I have tried to connect and was no possible

• Broad InstitutePosts: 3,739Member, Broadie, Moderator, Dev admin

@d.aguilera
Hi,

Sorry about that. I was told it should be back and up running smoothly again. I have emailed our IT department again.

-Sheila

• Broad InstitutePosts: 3,739Member, Broadie, Moderator, Dev admin

@bijuissac @marchoeppner @panda @tkoyama @d.aguliera
Hi,

The FTP should be back up and running again. Please let me know if you are still having trouble.

Thanks,
Sheila

• AustraliaPosts: 2Member

@Sheila said:
bijuissac marchoeppner panda tkoyama d.aguliera
Hi,

The FTP should be back up and running again. Please let me know if you are still having trouble.

Thanks,
Sheila

Hi Sheila,

I have tried accessing FTP server just now and it's not available?
Any help would be appreciated

• AustraliaPosts: 2Member

Hi Sheila,

I have tried accessing it again through Cyberduck and it says "530 Sorry, max 25 users --try again later".
Not sure what does that mean?

• Posts: 10,382Administrator, Dev admin

Probably that many people were trying to use it at the same time. We're planning to upgrade to a better system, but I'm afraid that for now you'll have to try again later. Apologies for the inconvenience.

Geraldine Van der Auwera, PhD

• Posts: 4Member

Hi Sheila and Geraldine,

I too couldn't download the rest of the bundle after downloading some of the files and lost connection. I hope the max 25 users quota get increased soon. Thank you very much.

• Broad InstitutePosts: 3,739Member, Broadie, Moderator, Dev admin

@jjmmii
Hi,

Sorry about that. Yes, the system will be upgraded, but unfortunately, not yet.

-Sheila

• boston maPosts: 1Member

Hi all,

I tried accessing the server today and it wasn't working for me. Has this been resolved for other users? Is there a workaround?

Thanks a bunch!
~Lina

• Broad InstitutePosts: 3,739Member, Broadie, Moderator, Dev admin

@lfaller
Hi Lina,

Perhaps try again? I know there were some issues that should be resolved now.

-Sheila

• chinaPosts: 1Member
edited February 25

your username and password seems not work when i linked to ftp://gsapubftp-anonymous@ftp.broadinstitute.org/bundle

Post edited by matthew on
• chinaPosts: 1Member

It works

• Posts: 3Member

I attempt to ftp in but get a Connection refused error.

• Broad InstitutePosts: 3,739Member, Broadie, Moderator, Dev admin

@kbanyas
Hi,

Can you try again? It is working for me now.

-Sheila

• SingaporePosts: 3Member

Hi, i tried to log in the GSA public FTP server. It says - Sorry, max 25 users -- try again later

• SingaporePosts: 3Member

maximum 25 users. Why so less? Is there any link to download the db snp vcf file to run for muTect2? Thanks

#### Issue · Github April 6 by Sheila

Issue Number
790
State
closed
Last Updated
Assignee
Array
Milestone
Array
Closed By
vdauwera
• Posts: 10,382Administrator, Dev admin

Hi @raman91, I'm sorry you ran into this limitation. We share the FTP server with the rest of our institute so we cannot offer unlimited download bandwidth. We have a project to move the bundle to a cloud platform to make it easier for people to access the data quickly and reliably from wherever they are in the world, but we are still figuring out some details (such as how to keep this service completely free for everyone).

Geraldine Van der Auwera, PhD

• SwedenPosts: 25Member

Sorry guys, but I'm new to this. I tried to connect to the server through Finder in Mac OSX to upload files for a bug report, typing ftp://gsapubftp@ftp.broadinstitute.org and the password in the instructions above. I seem to access a folder but I have no rights to write anything in it. Help!

• Broad InstitutePosts: 3,739Member, Broadie, Moderator, Dev admin

@slament
Hi,

Can you try this link: ftp://gsapubftp-anonymous@ftp.broadinstitute.org/bundle

Also have a look at this page.

-Sheila

• SwedenPosts: 25Member

Hi @Sheila, thank you for your answer. However I'm trying to upload stuff (not download), so I think that link is not useful to me. Is that correct?

Thanks!

• Broad InstitutePosts: 3,739Member, Broadie, Moderator, Dev admin

@slament
Hi,

The webpage I linked you to has instructions for uploading as well. I just tried it away from the Broad and it works for me.

I hope it works when you try again!

-Sheila

• SwedenPosts: 25Member

Hi again @Sheila. The instructions in the link weren't working for me as I mention in my original question, when trying to connect just from Finder. I gave up and I ended up downloading FileZilla. It seems now I can upload stuff with it

• slcPosts: 1Member

I've tried this link: ftp://gsapubftp-anonymous@ftp.broadinstitute.org/bundle
and this ftp://ftp.broadinstitute.org/pub/ExAC_release

I get messages that this site cannot be reached. Help!

• Broad InstitutePosts: 3,739Member, Broadie, Moderator, Dev admin

@tllepp
Hi,

Have you tried using FileZilla or trying the other options given in this document? Hopefully one of those works for you!

-Sheila

• Posts: 22Member

@Sheila said:
@tllepp
Hi,

Have you tried using FileZilla or trying the other options given in this document? Hopefully one of those works for you!

-Sheila

FileZilla doesn't work either. Below is the error message we got from FileZilla.

Status: Insecure server, it does not support FTP over TLS.
Command: USER gsapubftp
Response: 331 Password required for gsapubftp
Command: PASS ********
Response: 530 Sorry, max 20 users -- try again later
Error: Critical error: Could not connect to server

• Posts: 10,382Administrator, Dev admin

It looks like the FTP has been having some stability issues again. We're looking into replacing it by a better solution. In the meantime, please try again after an hour or two. Apologies for the inconvenience!

Geraldine Van der Auwera, PhD

• CambridgePosts: 1Member

@Geraldine_VdAuwera said:
It looks like the FTP has been having some stability issues again. We're looking into replacing it by a better solution. In the meantime, please try again after an hour or two. Apologies for the inconvenience!

Is it back?
It keeps asking user/pwd:
ftp://gsapubftp-anonymous@ftp.broadinstitute.org/bundle/hg38/hg38bundle/

• Broad InstitutePosts: 3,739Member, Broadie, Moderator, Dev admin

@Sung
Hi,

We are sorry for the inconvenience. I tried a few times myelf, and sometimes I am able to access the page you linked to, and sometimes I am not. I think the best recommendation is to try again

-Sheila

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