Maximum size for HaplotypeCaller

eflynn90eflynn90 Washington DCPosts: 56Member

I'm running HaplotypeCaller, and I was wondering what a recommended cohort size was. Would 30 to 40 families (100 to 150 individuals) be too large? Is there a maximum recommended size for number of independent alleles/number of individuals? How does the run time scale with additional individuals?

Thanks, Elise


Best Answers


Sign In or Register to comment.