Bug Bulletin: The GenomeLocPArser error in SplitNCigarReads has been fixed; if you encounter it, use the latest nightly build.

ReduceReads - No real operator (M|I|D|N) in CIGAR

Hi. When I reduce my BAM files with ReduceReads and then run HaplotypeCaller I get this warning:

Ignoring SAM validation error: ERROR: Read name 1060, No real operator (M|I|D|N) in CIGAR

Why is this? Is it OK to inore it?

Answers

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