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Hi! The title says it all. Im trying to narrow down my vcf. Which tools is good to answer this question?
I have tried this:
java -Xmx4g -jar GenomeAnalysisTK.jar \ -R genome.fa \ --filter_reads_with_N_cigar \ -T CombineVariants \ -V:COHORT1 path \ -V:COHORT2 path \ --filteredAreUncalled \ -o path
But the output seams incomprehensibly massive!