Bug Bulletin: The GenomeLocPArser error in SplitNCigarReads has been fixed; if you encounter it, use the latest nightly build.

# of lanes and BQSR

blueskypyblueskypy Posts: 213Member

I have a study including 100 samples. While most samples were sequenced in one lane, a dozen were in two lanes. I wonder if the difference in # of lanes may lead to difference in overall base quality scores after BQSR?


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