Bug Bulletin: we have identified a bug that affects indexing when producing gzipped VCFs. This will be fixed in the upcoming 3.2 release; in the meantime you need to reindex gzipped VCFs using Tabix.
how do you usually select variants on VCF files?
I would like to know what's the common standards for filtering VCF files? do you filter by depth of coverage or anything else? for exome-sequencing
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