Bug Bulletin: The recent 3.2 release fixes many issues. If you run into a problem, please try the latest version before posting a bug report, as your problem may already have been solved.

Haplotypecaller, change setting after the run!

myoglumyoglu Posts: 39Member

--stand_emit_conf and --stand_call_conf is by default set to 30

Everything lower will be "LOWQUAL", but is it possible to set --stand_emit_conf and --stand_call_conf set to 2, without running everything one more time?

Thanks!

Best Answers

Answers

Sign In or Register to comment.