Service note: Geraldine will be on vacation March 7-16. During this time, the team may not be able to answer your questions and comments in the forum. Regular service will resume March 17. Apologies for any inconvenience!
can I use
samtools index to index reduced bam files? I'm using GATK version 2.7-2-g6bda569 and HC asks for the index files.
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