Bug Bulletin: we have identified a bug that affects indexing when producing gzipped VCFs. This will be fixed in the upcoming 3.2 release; in the meantime you need to reindex gzipped VCFs using Tabix.

where is UnifiedGenotyper's source code

dnaasednaase USC Epigenome CenterPosts: 0Member

Hi All, I developed some tools deeply based on UnifiesGenotyper Engine long time ago (GATK V1.5). Now I want to update some of my tools to GATK V2. But in Github source code, I can't find these walkers source code anymore... Are these code still public available, and when did they disappear? If they are still "alive" (open source..), could anyone tell me where they are?

In the previous very old version, it was under "org.broadinstitute.sting.gatk.walkers.genotyper.UnifiedGenotyper"

Thanks very much!!



Sign In or Register to comment.