Bug Bulletin: we have identified a bug that affects indexing when producing gzipped VCFs. This will be fixed in the upcoming 3.2 release; in the meantime you need to reindex gzipped VCFs using Tabix.

Reanalysis using GATK 2.6-5

DrepanisDrepanis Posts: 5Member

I preformed Phase 1 with GATK 2.5-2. Has 2.6-5 changed enough to warrant redoing with the GATK 2.6-5? In particular, I would like to use the new plotting features of AnalyzeCovariates. Do I need to redo this in order to use the latest?

If I can use GATK 2.5-2 for Phase 1, can I move on with GATK 2.6-5?

Thank you.

Best Answer

Sign In or Register to comment.