Bug Bulletin: we have identified a bug that affects indexing when producing gzipped VCFs. This will be fixed in the upcoming 3.2 release; in the meantime you need to reindex gzipped VCFs using Tabix.

How does HaplotypeCaller identify potentially variable regions?

aciolfiaciolfi Posts: 6Member
edited July 2013 in Ask the team

Hi there,

I'm starting to use use the HaplotypeCaller to identify variants in my exome projects, but I was wondering how it initially determines if a region has the potential to be variable. I couldn't find any useful documentation, online...so could anyone of you help me to basically understand this first step?

Thank you in advance.

Post edited by aciolfi on

Best Answer

Answers

Sign In or Register to comment.