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UnifiedGenotyper failure

Nick_BeesonNick_Beeson Posts: 20Member

I have twice run UnifiedGenotyper and the resultant .vcf file contains only part of chromosome 20. I do not see what I am doing wrong. Neither do the other two people in the lab who have extensive experience with GATKcat

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LogFile_Q30.txt
85K
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bamFileSize.txt
648B

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