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Dear GATK Users,
I am using GATK for first time. I am doing Targeted reseq Analysis. while i am running Unified Genotyper in Galaxy interface. it gives error message as mentioned below..
"ERROR MESSAGE: The fasta file you specified (/tmp/tmp-gatk-WBrGTf) does not exist."
But i places the Fasta file path in .loc file.
Also could anyone tell what are the preprocessing steps before using Bam file for Unified Genotyper??
Your answers are very much Appericiated.