How to use GATK for RNA-seq analysis?

danielyindanielyin Posts: 7Member

Hi all: I find that among all the work flows of GATK http://www.broadinstitute.org/gatk/guide/topic?name=methods-and-workflows there are no workflows for RNA-seq analysis. I understand that GATK mainly focuses on variant calling, can anyone tell me how to use GATK for RNA-seq analysis?

thanks daniel

Answers

Sign In or Register to comment.