Bug Bulletin: we have identified a bug that affects indexing when producing gzipped VCFs. This will be fixed in the upcoming 3.2 release; in the meantime you need to reindex gzipped VCFs using Tabix.

ReduceReads stack trace issue.

srynearson1srynearson1 Posts: 10Member

Hello all thank for the great work.

I have run into an issue with ReduceReads and I was hoping you could offer some insite. I'm getting the following stack trace issue (attached file). I looked around the forums, and others who were getting stack trace issue using ReduceReads were told code fixes would remedy the issue so I thought I would check with you. I also ran samtools flagstat.

txt
txt
nohup_bamstat.txt
5K

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