PhaseByTransmission for multiallelic loci

erikgarrisonerikgarrison Posts: 3Member

I'm attempting to use PhaseByTransmission

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  • erikgarrisonerikgarrison Posts: 3Member

    I am attempting to use PhaseByTransmission :)

    I'd like to discuss the use of multiallelic variants with the authors, so I'm just looking for their contact information.

  • Geraldine_VdAuweraGeraldine_VdAuwera Posts: 7,424Administrator, GATK Developer admin

    Correction -- PBT was actually written by Laurent Francioli. I have notified him of your interest and invited him to respond in this thread.

    Geraldine Van der Auwera, PhD

  • LaurentLaurent Posts: 38Member, GSA Collaborator

    Hi Erik,

    I indeed wrote PBT and currently it doesn't support multi-allelic sites. I am however planning to address this in the next few months.. If you have ideas or want to help with it, I'd of course be happy to hear your suggestions!

    Cheers,
    Laurent

  • erikgarrisonerikgarrison Posts: 3Member

    Hi Laurent,

    Do you have a written description of the algorithm available? This might help me see how I could help.

    Best,
    Erik

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