PhaseByTransmission for multiallelic loci

erikgarrisonerikgarrison Posts: 3Member

I'm attempting to use PhaseByTransmission

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  • erikgarrisonerikgarrison Posts: 3Member

    I am attempting to use PhaseByTransmission :)

    I'd like to discuss the use of multiallelic variants with the authors, so I'm just looking for their contact information.

  • Geraldine_VdAuweraGeraldine_VdAuwera Posts: 8,737Administrator, GATK Dev admin

    Correction -- PBT was actually written by Laurent Francioli. I have notified him of your interest and invited him to respond in this thread.

    Geraldine Van der Auwera, PhD

  • LaurentLaurent Posts: 43Member, DSDE Collaborator ✭✭

    Hi Erik,

    I indeed wrote PBT and currently it doesn't support multi-allelic sites. I am however planning to address this in the next few months.. If you have ideas or want to help with it, I'd of course be happy to hear your suggestions!


  • erikgarrisonerikgarrison Posts: 3Member

    Hi Laurent,

    Do you have a written description of the algorithm available? This might help me see how I could help.


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