Bug Bulletin: The recent 3.2 release fixes many issues. If you run into a problem, please try the latest version before posting a bug report, as your problem may already have been solved.

Variant calling on Tumor samples (exome) - HaplotypeCaller or UnifiedGenotyper?

praveenrajspraveenrajs Posts: 5Member

Hi there,
According to your experience, what do you suggest for calling variants in tumor samples (exome) - HaplotypeCaller or UnifiedGenotyper? Have you seen any (major or minor) difference with both the callers on same exome tumor samples? What's your advice. Do you have any reference publication(s) where HaplotypeCaller is used on tumor samples?
Thanks
Raj

Comments

Sign In or Register to comment.