It looks like you're new here. If you want to get involved, click one of these buttons!
My indel calling VCF has the following information:
##INFO=<ID=N_MQ,Number=2,Type=Float,Description="In NORMAL: average mapping quality of consensus indel-supporting reads/reference-supporting reads">
so one example of my indels is:
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT exom_aladaz chr1 54690639 . G GCCC . . N_AC=0,0;N_DP=19;N_MM=0.0,0.36842105;N_MQ=0.0,33.894737;N_NQSBQ=0.0,31.80368;N_NQSMM=0.0,0.0;N_SC=0,0,19,0;SOMATIC;T_AC=6,6;T_DP=11;T_MM=0.5,0.2;T_MQ=44.5,29.0;T_NQSBQ=30.85,33.36;T_NQSMM=0.016666668,0.0;T_SC=6,0,5,0 GT:GQ 0/1:0
If I want to filter indel calls with N_MQ <30 for both consensus indel-supporting reads/reference-supporting reads, how should I write the SelectVariants for N_MQ=0.0,33.894737?