Bug Bulletin: we have identified a bug that affects indexing when producing gzipped VCFs. This will be fixed in the upcoming 3.2 release; in the meantime you need to reindex gzipped VCFs using Tabix.

What is GGA mode?

getvictorgetvictor Posts: 1Member

In HaplotypeCaller, what is GGA mode? How is it different from normal mode?

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