SomaticIndelDetector is deprecated ??

sbahetisbaheti Posts: 11Member


I am using the latest version of GATK 2.4.9 and i don't find the Somatic Indel Detector walker java -jar GenomeAnalysisTK.jar -T SomaticIndelDetector -h

ERROR ------------------------------------------------------------------------------------------
ERROR A USER ERROR has occurred (version 2.4-9-g532efad):
ERROR The invalid arguments or inputs must be corrected before the GATK can proceed
ERROR Please do not post this error to the GATK forum
ERROR See the documentation (rerun with -h) for this tool to view allowable command-line arguments.
ERROR Visit our website and forum for extensive documentation and answers to
ERROR commonly asked questions
ERROR MESSAGE: Invalid command line: Malformed walker argument: Could not find walker with name: SomaticIndelDetector
ERROR ------------------------------------------------------------------------------------------

Is this walker is not supported any more.

Thanks Saurabh

Best Answer


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